Friday 3 May 2013

How to: create nexus input files for Network (www.fluxus-engineering.com)

It is a bit of time I was thinking that this post may be of help to people intersted in genealogical network reconstruction under the median joining algorihtm. www.Fluxus-engineering.com provides, free of charge, the phylogenetic Network software in its as of today version 4.611. Network makes use of the median joining algorithm to generate genealogical trees from DNA, aminoacid, linguistic and other data but can also provide age estimates for the ancestral nodes in the tree topology. I have used several times this software in the past and I was impresed for its versatility, the graphics (compared to TCS or Splitstree) and its friendly interface. However, contrary to TCS and Splitstree, the Network team suggests the use of “recommended” add-ons such as DNA Alignment, Network Publisher and pibase for importing data without errors, create publication quality graphics and generating network input files (.rdf) from next generation sequencing files respectively. Despite Network is freely distributed, the add-ons are not.